WGS for pure bacterial isolates — species ID, genome assembly, AMR detection. 16S/ITS for microbiome communities — taxonomy, diversity, composition. AI-powered interpretation. Publication-ready reports. Fully automated.
From raw sequencing data to publication-ready report — no command line, no HPC, no waiting.
Drag and drop your .fastq.gz files. Choose WGS for whole-genome analysis or 16S/ITS for amplicon-based microbiome profiling. We support Illumina paired-end and single-end reads.
Our cloud pipeline runs the full analysis automatically — WGS assembly with species ID, annotation, and AMR detection, or DADA2-based amplicon denoising with taxonomy and diversity.
Browse interactive web reports with AI-powered interpretation, composition charts, diversity metrics, and downloadable PDF reports. Group samples into projects for cross-sample comparison.
A complete microbial genomics platform — WGS assembly and 16S/ITS amplicon analysis, from raw reads to publication-ready interactive reports with AI insights.
Fastp-powered QC with read quality filtering, adapter trimming, and GC content analysis. ConFindr contamination detection for isolate purity verification.
Kraken2 + Bracken taxonomic classification for WGS pure isolates — species-level identification with confidence scores and genome coverage metrics.
SPAdes de novo assembly with QUAST quality assessment — N50, contig count, genome size, and completeness metrics.
Bakta annotation identifying all coding sequences, rRNA, tRNA, and functional categories across your genome.
AMRFinderPlus identifies antimicrobial resistance genes, stress response genes, and virulence factors using the NCBI curated reference database.
Automated multi-locus sequence typing for epidemiological tracking, outbreak investigation, and strain-level identification.
Microbiome community profiling — DADA2 denoising with SILVA v138.2 (16S) and UNITE v9.0 (ITS) taxonomy at phylum, genus, and species level where resolvable.
Shannon, Simpson, Chao1, Faith's PD, Good's coverage with rarefaction curves and clinical interpretation for microbiome studies.
MAFFT alignment + FastTree phylogenetic reconstruction for 16S amplicon data. Interactive radial tree visualization in the web report.
PICRUSt2 predicts functional potential from 16S data — metabolic pathway abundances inferred from ASV phylogenetic placement.
AI generates professional clinical and research interpretations for every section of your report — QC, taxonomy, diversity, AMR, and overall summary.
Web-based interactive reports with composition charts, heatmaps, pipeline timelines, and dynamic visualizations — accessible from any device.
Group samples into projects for cross-sample comparison — genus abundance heatmaps, diversity benchmarking, and ANCOM-BC2 differential abundance analysis.
Download complete data packages with CSV tables, raw analysis files, charts, and structured JSON — ideal for downstream analysis and publication supplements.
Live progress tracking for each pipeline step. Monitor QC, assembly, annotation, taxonomy, and diversity computation as they run.
Scalable cloud infrastructure powers every analysis. Submit your files and get results when they're ready — no local hardware or HPC cluster needed.
Built on peer-reviewed, publication-ready bioinformatics tools trusted by the academic community.
Pay per analysis. No subscription required. Start with 3 free analyses.
Start with 3 free analyses. No credit card required. Upload your WGS or 16S/ITS amplicon FASTQ files and get AI-powered results in minutes.
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